2021
1. Tyrka, M., Mokrzycka, M., Bakera, B., Tyrka, D., Szeliga, M., Stojałowski, S., … & Krajewski, P. (2021). Evaluation of genetic structure in European wheat cultivars and advanced breeding lines using high-density genotyping-by-sequencing approach. BMC Genomics, 22(1), 1-17.
2020
1. Bakera, B., Rakoczy-Trojanowska, M. (2020). Isolation and structural analysis of the Bx6 and Bx7 genes controlling the biosynthesis of benzoxazinoids in rye (Secale cereale L.). Acta Physiol Plant, 42(4), 1-9.
2. Bakera, B., Święcicka, M., Stochmal, A., Kowalczyk, M., Bolibok, L., Rakoczy-Trojanowska, M. (2020). Benzoxazinoids biosynthesis in rye (Secale cereale L.) is affected by low temperature. Agronomy, 10(9), 1260.
3. Bernacki, M. J., Czarnocka, W., Zaborowska, M., Różańska, E., Labudda, M., Rusaczonek, A., … & Karpiński, S. (2020). EDS1-dependent cell death and the antioxidant system in arabidopsis leaves is deregulated by the mammalian bax. Cells, 9(11), 2454.
4. Czarnocka, W., Fichman, Y., Bernacki, M., Różańska, E., Sańko-Sawczenko, I., Mittler, R., & Karpiński, S. (2020). FMO1 Is Involved in Excess Light Stress-Induced Signal Transduction and Cell Death Signaling. Cells, 9(10), 2163.
5. Czarnocka, W., Rusaczonek, A., Willems, P., Sujkowska-Rybkowska, M., Van Breusegem, F., Karpiński, S. (2020). Novel Role of JAC1 in Influencing Photosynthesis, Stomatal Conductance, and Photooxidative Stress Signalling Pathway in Arabidopsis thaliana. Front Plant Sci, 11, 1124.
6. Gawroński, P., Burdiak, P., Scharff, L. B., Mielecki, J., Górecka, M., Zaborowska, M., … & Karpiński, S. (2020). CIA2 and CIA2‐LIKE are required for optimal photosynthesis and stress responses in Arabidopsis thaliana. Plant J. https://doi.org/10.1111/tpj.15058
7. Gawroński, P., Pałac, A., & Scharff, L. B. (2020). Secondary Structure of Chloroplast mRNAs In Vivo and In Vitro. Plants, 9(3), 323.
8. Górecka, M., Lewandowska, M., Dąbrowska‐Bronk, J., Białasek, M., Barczak‐Brzyżek, A., Kulasek, M., … & Karpiński, S. (2020). Photosystem II 22kDa protein level‐a prerequisite for excess light‐inducible memory, cross‐tolerance to UV‐C and regulation of electrical signalling. Plant Cell Environ, 43(3), 649-661.
9. Hawliczek, A., Bolibok, L., Tofil, K., Borzęcka, E., Jankowicz-Cieślak, J., Gawroński, P., … & Bolibok-Brągoszewska, H. (2020). Deep sampling and pooled amplicon sequencing reveals hidden genic variation in heterogeneous rye accessions. BMC Genomics, 21(1), 1-16.
10. Kaźmińska, K., Hallmann, E., Korzeniewska, A., Niemirowicz-Szczytt, K., & Bartoszewski, G. (2020). Identification of Fruit-Associated QTLs in Winter Squash (Cucurbita maxima Duchesne) Using Recombinant Inbred Lines. Genes, 11(4), 419.
11. Merheb, J., Pawełkowicz, M., Branca, F., Bolibok-Brągoszewska, H., Skarzyńska, A., Pląder, W., & Chalak, L. (2020). Characterization of Lebanese Germplasm of Snake Melon (Cucumis melo subsp. melo var. flexuosus) Using Morphological Traits and SSR Markers. Agronomy, 10(9), 1293.
12. Mielecki, J., Gawroński, P., & Karpiński, S. (2020). Retrograde signaling: Understanding the communication between organelles. Int J Mol Sci, 21(17), 6173.
13. Osipowski, P., Pawełkowicz, M., Wojcieszek, M., Skarzyńska, A., Przybecki, Z., & Pląder, W. (2020). A high-quality cucumber genome assembly enhances computational comparative genomics. Mol Genet Genom, 295(1), 177-193.
14. Pawełkowicz, M. E., Skarzyńska, A., Sroka, M., Szwacka, M., Pniewski, T., & Pląder, W. (2020). Effect of Transgenesis on mRNA and miRNA Profiles in Cucumber Fruits Expressing Thaumatin II. Genes, 11(3), 334.
15. Rakoczy‐Trojanowska, M., Święcicka, M., Bakera, B., Kowalczyk, M., Stochmal, A., & Bolibok, L. (2020). Cocultivating rye with berseem clover affects benzoxazinoid production and expression of related genes. Crop Sci, 60(6), 3228-3246.
16. Skarzyńska, A., Pawełkowicz, M., & Pląder, W. (2020). Genome-wide discovery of DNA variants in cucumber somaclonal lines. Gene, 736, 144412.
17. Skoczowski, A., Przemieniecki, S. W., Oliwa, J., Kula-Maximenko, M., Rys, M., Stawoska, I., & Karpiński, S. (2020). Estimation of microbiological contamination of maize seeds using isothermal calorimetry. J Therm Anal Calorim, 142(2), 749-754.
18. Stephani, M., Picchianti, L., Gajic, A., Beveridge, R., Skarwan, E., de Medina Hernandez, V. S., … & Dagdas, Y. (2020). A cross-kingdom conserved ER-phagy receptor maintains endoplasmic reticulum homeostasis during stress. Elife, 9, e58396.
19. Święcicka, M., Dmochowska-Boguta, M., Orczyk, W., Grądzielewska, A., Stochmal, A., Kowalczyk, M., … & Rakoczy-Trojanowska, M. (2020). Changes in benzoxazinoid contents and the expression of the associated genes in rye (Secale cereale L.) due to brown rust and the inoculation procedure. PloS one, 15(5), e0233807.
20. Tańska, M., Ogrodowska, D., Bartoszewski, G., Korzeniewska, A., & Konopka, I. (2020). Seed Lipid Composition of New Hybrids of Styrian Oil Pumpkin Grown in Poland. Agronomy, 10(8), 1104.
21. Targonska-Karasek, M., Boczkowska, M., Podyma, W., Pasnik, M., Niedzielski, M., Rucinska, A., … & Rakoczy-Trojanowska, M. (2020). Investigation of obsolete diversity of rye (Secale cereale L.) using multiplexed SSR fingerprinting and evaluation of agronomic traits. J App Genet, 61(4), 513-529.
22. Wlazło, A., Święcicka, M., Koter, M. D., Krępski, T., Bolibok, L., Stochmal, A., … & Rakoczy-Trojanowska, M. (2020). Genes ScBx1 and ScIgl—Competitors or Cooperators?. Genes, 11(2), 223.
2019
1. Barczak-Brzyżek, A. Brzyżek, G., Koter, M., Gawroński, P., Filipecki, M. (2019). Exposure to High-Intensity Light Systemically Induces Micro-Transcriptomic Changes in Arabidopsis thaliana Roots. Int J Mol Sci, 20(20), 5131.
2. Bakera, B., Rakoczy-Trojanowska, M., Krajewski, M., Mokrzycka, M., Szeliga, M., & Tyrka, M. (2019). Analiza struktury genetycznej populacji składającej się z 510 form pszenicy zwyczajnej (Triticum aestivum L.) z wykorzystaniem markerów SSR SNP. Biuletyn IHAR, (285).
3. Baranowski, Ł., Różańska, E., Sańko-Sawczenko, I., Matuszkiewicz, M., Znojek, E., Filipecki, M., … & Sobczak, M. (2019). Arabidopsis tonoplast intrinsic protein and vacuolar H+-adenosinetriphosphatase reflect vacuole dynamics during development of syncytia induced by the beet cyst nematode Heterodera schachtii. Protoplasma, 256(2), 419-429.
4. Bernacki, M. J., Czarnocka, W., Rusaczonek, A., Witoń, D., Kęska, S., Czyż, J., … & Karpiński, S. (2019). LSD1‐, EDS1‐and PAD4‐dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency and seed yield in Arabidopsis thaliana. Physiol Plant, 165(2), 369-382.
5. Bernacki, M. J., Czarnocka, W., Szechyńska-Hebda, M., Mittler, R., & Karpiński, S. (2019). Biotechnological Potential of LSD1, EDS1, and PAD4 in the Improvement of Crops and Industrial Plants. Plants, 8(8), 290.
6. Holz, S., Kube, M., Bartoszewski, G., Huettel, B., & Büttner, C. (2019). Initial studies on cucumber transcriptome analysis under silicon treatment. Silicon, 11(5), 2365-2369.
7. Kiełkiewicz, M., Barczak-Brzyżek, A., Karpińska, B., & Filipecki, M. (2019). Unravelling the Complexity of Plant Defense Induced by a Simultaneous and Sequential Mite and Aphid Infestation. International journal of molecular sciences, 20(4), 806.
8. Matuszkiewicz, M., Koter, M. D., & Filipecki, M. (2019). Limited ventilation causes stress and changes in Arabidopsis morphological, physiological and molecular phenotype during in vitro growth. Plant Physiology and Biochemistry, 135, 554-562.
9. Pawełkowicz, M., Pryszcz, L., Skarzyńska, A., Wóycicki, R. K., Posyniak, K., Rymuszka, J., … & Pląder, W. (2019). Comparative transcriptome analysis reveals new molecular pathways for cucumber genes related to sex determination. Plant reproduction, 32(2), 193-216.
10. Pawełkowicz, M. E., Skarzyńska, A., Pląder, W., & Przybecki, Z. (2019). Genetic and molecular bases of cucumber (Cucumis sativus L.) sex determination. Molecular breeding, 39(3), 1-27.
11. Yin, Z., Murawska, Z., Xie, F., Pawełkowicz, M., Michalak, K., Zhang, B., & Lebecka, R. (2019). microRNA response in potato virus Y infected tobacco shows strain-specificity depending on host and symptom severity. Virus research, 260, 20-32.
2018
1. Gawroński P., Jensen P.E., Karpiński S., Leister D., Scharff L.B. Pausing of Chloroplast Ribosomes Is Induced by Multiple Features and Is Linked to the Assembly of Photosynthetic Complexes. 2018. Plant Physiol. 176(3):2557-2569. doi: 10.1104/pp.17.01564.
2. Pulido P., Zagari N., Manavski N., Gawronski P., Matthes A., Scharff L.B., Meurer J., Leister D. CHLOROPLAST RIBOSOME ASSOCIATED Supports Translation under Stress and Interacts with the Ribosomal 30S Subunit. Plant Physiol. 2018 177(4):1539-1554. doi: 10.1104/pp.18.00602
3. Różańska E., Czarnocka W., Baranowski Ł., Mielecki J., Almeida Engler J., Sobczak M. 2018. Expression of both Arabidopsis γ-tubulin genes is essential for development of a functional syncytium induced by Heterodera schachtii. Plant Cell Rep. 2018 Sep;37(9):1279-1292. doi: 10.1007/s00299-018-2312-7. Epub 2018 Jun 12.
4. Bernacki M.J., Czarnocka W., Witoń D., Rusaczonek A., Szechyńska-Hebda M., Ślesak I., Dąbrowska_Bronk J., and Karpiński S. 2018. ENHANCED DISEASE SUSCEPTIBILITY 1 (EDS1) affects development, photosynthesis, and hormonal homeostasis in hybrid aspen (Populus tremula L. ×P. tremuloides). J Plant Physiol. Apr 25;226:91-102. doi: 10.1016/j.jplph.2018.04.014
5. Matuszkiewicz M., Koter M.D., Filipecki M. 2018. Limited ventilation causes stress and changes in Arabidopsis morphological, physiological and molecular phenotype during in vitro growth. Plant Physiol Biochem. 2018 Feb;135:554-562. doi: 10.1016/j.plaphy.2018.11.003. Epub 2018 Nov 10.
6. Słomnicka R., Olczak-Woltman H., Oskiera M., Schollenberger M., Niemirowicz-Szczytt K., Bartoszewski G. 2018. Genome analysis of Pseudomonas syringae pv. lachrymans strain 814/98 indicates diversity within the pathovar. Eur. J. Plant Pathol. 151: 663–676.
7. Baranowski Ł., Różańska E., Sańko-Sawczenko I., Matuszkiewicz M., Znojek E., Filipecki M., Grundler F.M.W., Sobczak M. 2018. Arabidopsis tonoplast intrinsic protein and vacuolar H+-adenosinetriphosphatase reflect vacuole dynamics during development of syncytia induced by the beet cyst nematode Heterodera schachtii. Protoplasma. 2018 Sep 5. doi: 10.1007/s00709-018-1303-4. [Epub ahead of print]
8. Matuszkiewicz M., Sobczak M., Cabrera J., Escobar C., Karpiński S., Filipecki M. 2018. The Role of Programmed Cell Death Regulator LSD1 in Nematode-Induced Syncytium Formation. Front Plant Sci. 2018 Mar 19;9:314. doi: 10.3389/fpls.2018.00314.
9. Koter M.D., Święcicka M., Matuszkiewicz M., Pacak A., Derebecka N., Filipecki M. 2018. The miRNAome dynamics during developmental and metabolic reprogramming of tomato root infected with potato cyst nematode. Plant Sci. 268:18-29. doi: 10.1016/j.plantsci.2017.12.003.
10. Malinowski R. Fry S.C., Zuzga S., Wiśniewska A., Godlewski M., Noyszewski A., Barczak-Brzyżek A., Malepszy S., Filipecki M. 2018. Developmental expression of the cucumber Cs-XTH1 and Cs-XTH3 genes, encoding xyloglucan endotransglucosylase/hydrolases, can be influenced by mechanical stimuli. Acta Physiol Plantarum 40(7):130. DOI: 10.1007/s11738-018-2707-7
11. Mróz Y.L., Eves-van den Akker S., Bernat A., Skarzyńska A., Pryszcz L., Olberg M., Havey M.J., Bartoszewski G. 2018. Transcriptome analyses of mosaic (MSC) mitochondrial mutants of cucumber in a highly inbred nuclear background. G3: Genes Genomes Genetics 8: 953-965.
12. Słomnicka R., Olczak-Woltman H., Korzeniewska A, Gozdowski D., Niemirowicz-Szczytt K, Bartoszewski G. 2018. Genetic mapping of psl locus and quantitative trait loci for angular leaf spot resistance in cucumber (Cucumis sativus L.). Mol. Breed. 38:111.
13. Kaźmińska K., Hallmann E., Rusaczonek A., Korzeniewska A., Sobczak M., Filipczak J., Kuczerski K.S., Steciuk J., Sitarek-Andrzejczyk M., Gajewski M., Niemirowicz-Szczytt K. 2018. Genetic mapping of ovary colour and quantitative trait loci for carotenoid content in the fruit of Cucurbita maxima Duchesne. Mol. Breed. 38:114.
14. Targońska-Karasek M., Bolibok-Brągoszewska H., Oleniecki T., Sharifova S., Kopania M., Rakoczy-Trojanowska M. 2018. Verification of taxonomic relationships within the genus Secale (Poaceae: Pooideae: Triticeae) based on multiple molecular methods. Phytotaxa 383 (2). doi: http://dx.doi.org/10.11646/phytotaxa.383.2.1
15. Bernacki M.J., Czarnocka, W., Rusaczonek A., Witoń D., Kęska S., Czyż J., Szechyńska-Hebda M., and Karpiński. 2018. S. LSD1, EDS1 and PAD4-dependent conditional correlation among salicylic acid, hydrogen peroxide, water use efficiency, and seed yield in Arabidopsis thaliana. Physiol Plant. Nov 20. doi: 10.1111/ppl.12863.
16. Szwacka M, Pawełkowicz M, Skarzyńska A, Osipowski P, Wojcieszek M, Przybecki Z, Pląder W. Biological significance, computational analysis, and applications of plant microRNAs. 2018 Acta Physiologiae Plantarum 40:8:146 doi.org/10.1007/s11738-018-2718-
17. Borzęcka E., Hawliczek-Strulak A., Bolibok L., Gawroński P., Tofil K., Milczarski P., Stojałowski S., Myśkw B., targońska-Karasek M., Grądzielewska A., Smolik M., Kilian A., Bolibok-Brągoszewska H. Effective BAC clone anchoring with genotyping –by-sequencing and Diversity Arrays Technology in a large genome cereal rye. Scientific Reports. 2018.8:8428